LABORATORY DIAGNOSTIC TESTS AND HOW TO INTERPRET THEM of EHM development is greater in horses infected


with the neuropathogenic genotype (D752).8 Fur- thermore, detection of a neurotropic EHV-1 strain may influence therapy, especially the use of anti- viral drugs such as valacyclovir, used to decrease viremia and prevent the development of neurolog- ical sequelae.9 Contemporary EIV strains circulating worldwide


all belong to the H3N8 Florida sublineage. Recent EIV surveillance data has shown that Florida sub- lineage viruses from both clade 1 and 2 circulate in Europe, while clade 1 viruses have been primarily reported from North America. With the increased national and international transportation of equids, it is very important to monitor the spread of EIV using timely, fast, and reliable molecular diagnostic platforms. In past years, clade affiliation of EIV strains has been monitored using conventional nu- cleic acid sequencing techniques and more recently pyrosequencing, both of which are time- and labor intensive. Recent advances in genomic analysis have identified various SNPs of the hemagglutinin A1 gene of EIV virus able to determine clade affil- iation of EIV field isolates.10 Quantitative PCR assays are presently offered by individual diag- nostic laboratories in order to determine EIV clade affiliation. The information pertaining to EIV clade affiliation is important not only from an epidemiological standpoint but also to monitor and understand EIV outbreaks and update EIV vaccine strains in order to improve protection against clinical disease.


3. Conclusion


Quantitative PCR has without any doubt improved the accuracy and turnaround time for the detection of respiratory viruses. Novel molecular approaches are presently available to complement the already qualitative reporting of qPCR results for respiratory viruses. These include the use of parallel testing for well- and lesser-characterized respiratory vi- ruses in order to expand viral etiologies associated with IURTD, define the contagious nature of an infected horse by assessing the replicative status of selected viruses, and by defining the genotype of selected viruses in order to determine prognostic outcome (EHV-1 in the context of EHM) and vaccine effectiveness (EIV). However, while all these diag- nostic strategies add to a better interpretation of results, one must always keep in mind the biology of the suspected pathogen to be detected, the disease stage of the animal (acute versus subacute or


chronic), the collection of the most sensitive biolog- ical specimen (nasal versus nasopharyngeal secre- tions) to be used and test to be requested. When interpreting qPCR results, one must remember the factors listed above in order to be able to trouble- shoot and explain why a sample unexpectedly tested negative. In conclusion, novel molecular strategies such as absolute quantitation, detection of viral transcripts and genotyping will expand the possibil- ity to better characterize selected viruses, determine the level of environmental contamination and risk of transmission and monitor treatment response and vaccine effectiveness.


Acknowledgments


Declaration of Ethics The Author has adhered to the Principles of Veter- inary Medical Ethics of the AVMA.


Conflict of Interest The Author has no conflicts of interest.


References 1. Gilkerson JR, Bailey KE, Diaz-Me


´ndez A, et al. Update on


viral diseases of the equine respiratory tract. Vet Clin North Am Equine Pract 2015;31:91–104.


2. Pusterla N, Madigan JE, Leutenegger CM. Real-time poly- merase chain reaction: A novel molecular diagnostic tool for equine infectious diseases. J Vet Intern Med 2006;20:3–12.


3. Horsington J, Lynch SE, Gilkerson JR, et al. Equine picor- naviruses: Well known but poorly understood. Vet Microbiol 2013;167:78–85.


4. Diaz-Me ´ndez A, Hewson J, Shewen P, et al. Characteristics


of respiratory tract disease in horses inoculated with equine rhinitis A virus. Am J Vet Res 2014;75:169–178.


5. Hartley CA, Dynon KJ, Mekuria ZH, et al. Equine gamma- herpesviruses: Perfect parasites? Vet Microbiol 2013;167: 86–92.


6. Pusterla N, Leutenegger CM, Wilson WD, et al. Equine herpesvirus-4 kinetics in peripheral blood leukocytes and na- sopharyngeal secretions in foals using quantitative real-time TaqMan PCR. J Vet Diagn Invest 2005;17:578–581.


7. Goodman LB, Loregian A, Perkins GA, et al. A point muta- tion in a herpesvirus polymerase determines neuropathoge- nicity. PLoS Pathog 2007;3:e160.


8. Van de Walle GR, Goupil R, Wishon C, et al. A single- nucleotide polymorphism in a herpesvirus DNA polymerase is sufficient to cause lethal neurological disease. J Infect Dis 2009;200:20–25.


9. Maxwell LK, Bentz BG, Gilliam LL, et al. Efficacy of the early administration of valacyclovir hydrochloride for the treatment of neuropathogenic equine herpesvirus type-1 in- fection in horses. Am J Vet Res 2017;78:1126–1139.


10. Brister H, Barnum SM, Reedy S, et al. Validation of two multiplex real-time PCR assays based on single nucleotide polymorphisms of the HA1 gene of equine influenza A virus in order to differentiate between clade 1 and clade 2 Florida sublineage isolates. J Vet Diagn Invest 2019;31:137–141.


246 2019  Vol. 65  AAEP PROCEEDINGS


Page 1  |  Page 2  |  Page 3  |  Page 4  |  Page 5  |  Page 6  |  Page 7  |  Page 8  |  Page 9  |  Page 10  |  Page 11  |  Page 12  |  Page 13  |  Page 14  |  Page 15  |  Page 16  |  Page 17  |  Page 18  |  Page 19  |  Page 20  |  Page 21  |  Page 22  |  Page 23  |  Page 24  |  Page 25  |  Page 26  |  Page 27  |  Page 28  |  Page 29  |  Page 30  |  Page 31  |  Page 32  |  Page 33  |  Page 34  |  Page 35  |  Page 36  |  Page 37  |  Page 38  |  Page 39  |  Page 40  |  Page 41  |  Page 42  |  Page 43  |  Page 44  |  Page 45  |  Page 46  |  Page 47  |  Page 48  |  Page 49  |  Page 50  |  Page 51  |  Page 52  |  Page 53  |  Page 54  |  Page 55  |  Page 56  |  Page 57  |  Page 58  |  Page 59  |  Page 60  |  Page 61  |  Page 62  |  Page 63  |  Page 64  |  Page 65  |  Page 66  |  Page 67  |  Page 68  |  Page 69  |  Page 70  |  Page 71  |  Page 72  |  Page 73  |  Page 74  |  Page 75  |  Page 76  |  Page 77  |  Page 78  |  Page 79  |  Page 80  |  Page 81  |  Page 82  |  Page 83  |  Page 84  |  Page 85  |  Page 86  |  Page 87  |  Page 88  |  Page 89  |  Page 90  |  Page 91  |  Page 92  |  Page 93  |  Page 94  |  Page 95  |  Page 96  |  Page 97  |  Page 98  |  Page 99  |  Page 100  |  Page 101  |  Page 102  |  Page 103  |  Page 104  |  Page 105  |  Page 106  |  Page 107  |  Page 108  |  Page 109  |  Page 110  |  Page 111  |  Page 112  |  Page 113  |  Page 114  |  Page 115  |  Page 116  |  Page 117  |  Page 118  |  Page 119  |  Page 120  |  Page 121  |  Page 122  |  Page 123  |  Page 124  |  Page 125  |  Page 126  |  Page 127  |  Page 128  |  Page 129  |  Page 130  |  Page 131  |  Page 132  |  Page 133  |  Page 134  |  Page 135  |  Page 136  |  Page 137  |  Page 138  |  Page 139  |  Page 140  |  Page 141  |  Page 142  |  Page 143  |  Page 144  |  Page 145  |  Page 146  |  Page 147  |  Page 148  |  Page 149  |  Page 150  |  Page 151  |  Page 152  |  Page 153  |  Page 154  |  Page 155  |  Page 156  |  Page 157  |  Page 158  |  Page 159  |  Page 160  |  Page 161  |  Page 162  |  Page 163  |  Page 164  |  Page 165  |  Page 166  |  Page 167  |  Page 168  |  Page 169  |  Page 170  |  Page 171  |  Page 172  |  Page 173  |  Page 174  |  Page 175  |  Page 176  |  Page 177  |  Page 178  |  Page 179  |  Page 180  |  Page 181  |  Page 182  |  Page 183  |  Page 184  |  Page 185  |  Page 186  |  Page 187  |  Page 188  |  Page 189  |  Page 190  |  Page 191  |  Page 192  |  Page 193  |  Page 194  |  Page 195  |  Page 196  |  Page 197  |  Page 198  |  Page 199  |  Page 200  |  Page 201  |  Page 202  |  Page 203  |  Page 204  |  Page 205  |  Page 206  |  Page 207  |  Page 208  |  Page 209  |  Page 210  |  Page 211  |  Page 212  |  Page 213  |  Page 214  |  Page 215  |  Page 216  |  Page 217  |  Page 218  |  Page 219  |  Page 220  |  Page 221  |  Page 222  |  Page 223  |  Page 224  |  Page 225  |  Page 226  |  Page 227  |  Page 228  |  Page 229  |  Page 230  |  Page 231  |  Page 232  |  Page 233  |  Page 234  |  Page 235  |  Page 236  |  Page 237  |  Page 238  |  Page 239  |  Page 240  |  Page 241  |  Page 242  |  Page 243  |  Page 244  |  Page 245  |  Page 246  |  Page 247  |  Page 248  |  Page 249  |  Page 250  |  Page 251  |  Page 252  |  Page 253  |  Page 254  |  Page 255  |  Page 256  |  Page 257  |  Page 258  |  Page 259  |  Page 260  |  Page 261  |  Page 262  |  Page 263  |  Page 264  |  Page 265  |  Page 266  |  Page 267  |  Page 268  |  Page 269  |  Page 270  |  Page 271  |  Page 272  |  Page 273  |  Page 274  |  Page 275  |  Page 276  |  Page 277  |  Page 278  |  Page 279  |  Page 280  |  Page 281  |  Page 282  |  Page 283  |  Page 284  |  Page 285  |  Page 286  |  Page 287  |  Page 288  |  Page 289  |  Page 290  |  Page 291  |  Page 292  |  Page 293  |  Page 294  |  Page 295  |  Page 296  |  Page 297  |  Page 298  |  Page 299  |  Page 300  |  Page 301  |  Page 302  |  Page 303  |  Page 304  |  Page 305  |  Page 306  |  Page 307  |  Page 308  |  Page 309  |  Page 310  |  Page 311  |  Page 312  |  Page 313  |  Page 314  |  Page 315  |  Page 316  |  Page 317  |  Page 318  |  Page 319  |  Page 320  |  Page 321  |  Page 322  |  Page 323  |  Page 324  |  Page 325  |  Page 326  |  Page 327  |  Page 328  |  Page 329  |  Page 330  |  Page 331  |  Page 332  |  Page 333  |  Page 334  |  Page 335  |  Page 336  |  Page 337  |  Page 338  |  Page 339  |  Page 340  |  Page 341  |  Page 342  |  Page 343  |  Page 344  |  Page 345  |  Page 346  |  Page 347  |  Page 348  |  Page 349  |  Page 350  |  Page 351  |  Page 352  |  Page 353  |  Page 354  |  Page 355  |  Page 356  |  Page 357  |  Page 358  |  Page 359  |  Page 360  |  Page 361  |  Page 362  |  Page 363  |  Page 364  |  Page 365  |  Page 366  |  Page 367  |  Page 368  |  Page 369  |  Page 370  |  Page 371  |  Page 372  |  Page 373  |  Page 374  |  Page 375  |  Page 376  |  Page 377  |  Page 378  |  Page 379  |  Page 380  |  Page 381  |  Page 382  |  Page 383  |  Page 384  |  Page 385  |  Page 386  |  Page 387  |  Page 388  |  Page 389  |  Page 390  |  Page 391  |  Page 392  |  Page 393  |  Page 394  |  Page 395  |  Page 396  |  Page 397  |  Page 398  |  Page 399  |  Page 400  |  Page 401  |  Page 402  |  Page 403  |  Page 404  |  Page 405  |  Page 406  |  Page 407  |  Page 408  |  Page 409  |  Page 410  |  Page 411  |  Page 412  |  Page 413  |  Page 414  |  Page 415  |  Page 416  |  Page 417  |  Page 418  |  Page 419  |  Page 420  |  Page 421  |  Page 422  |  Page 423  |  Page 424  |  Page 425  |  Page 426  |  Page 427  |  Page 428  |  Page 429  |  Page 430  |  Page 431  |  Page 432  |  Page 433  |  Page 434  |  Page 435  |  Page 436  |  Page 437  |  Page 438  |  Page 439  |  Page 440  |  Page 441  |  Page 442  |  Page 443  |  Page 444  |  Page 445  |  Page 446  |  Page 447  |  Page 448  |  Page 449  |  Page 450  |  Page 451  |  Page 452  |  Page 453  |  Page 454  |  Page 455  |  Page 456  |  Page 457  |  Page 458  |  Page 459  |  Page 460  |  Page 461  |  Page 462  |  Page 463  |  Page 464  |  Page 465  |  Page 466  |  Page 467  |  Page 468  |  Page 469  |  Page 470  |  Page 471  |  Page 472  |  Page 473  |  Page 474  |  Page 475  |  Page 476  |  Page 477  |  Page 478  |  Page 479  |  Page 480  |  Page 481  |  Page 482  |  Page 483  |  Page 484  |  Page 485  |  Page 486  |  Page 487  |  Page 488  |  Page 489  |  Page 490  |  Page 491  |  Page 492  |  Page 493  |  Page 494  |  Page 495  |  Page 496  |  Page 497  |  Page 498  |  Page 499  |  Page 500  |  Page 501  |  Page 502  |  Page 503  |  Page 504  |  Page 505  |  Page 506  |  Page 507  |  Page 508  |  Page 509  |  Page 510  |  Page 511  |  Page 512  |  Page 513  |  Page 514  |  Page 515  |  Page 516  |  Page 517  |  Page 518  |  Page 519  |  Page 520  |  Page 521  |  Page 522  |  Page 523  |  Page 524  |  Page 525  |  Page 526  |  Page 527  |  Page 528  |  Page 529  |  Page 530  |  Page 531  |  Page 532  |  Page 533  |  Page 534  |  Page 535  |  Page 536  |  Page 537  |  Page 538  |  Page 539  |  Page 540  |  Page 541  |  Page 542  |  Page 543  |  Page 544  |  Page 545  |  Page 546  |  Page 547  |  Page 548  |  Page 549  |  Page 550  |  Page 551  |  Page 552  |  Page 553  |  Page 554  |  Page 555  |  Page 556  |  Page 557  |  Page 558  |  Page 559  |  Page 560  |  Page 561  |  Page 562  |  Page 563  |  Page 564  |  Page 565  |  Page 566  |  Page 567  |  Page 568  |  Page 569  |  Page 570  |  Page 571  |  Page 572  |  Page 573  |  Page 574  |  Page 575  |  Page 576